The electronic ground state and low-lying spectrum of the nitrogenase FeMo-cofactor in its protein environment
Difficulty 70: the model-level energy now has a classical preprint estimate to chemical accuracy, but the biological cofactor in its protein, with environment and spectroscopic constraints, has no agreed solution. Application value 46: relevant to nitrogen-fixation catalysis and to the quantum-advantage debate. Leverage 40: a single molecule, though a flagship benchmark that moves classical and quantum roadmaps.
The problem
Nobody has solved how electrons are arranged in the iron–molybdenum cluster that bacteria use to make ammonia from air.
- 1Bacteria fix nitrogen at room temperature
- 2Metal cluster has countless near-equal states
- 3Model problem: energy to 1 kcal/mol
- 4Classical estimate now claimed (preprint)
- 5Real cluster in protein still unsolved
System. FeMo-cofactor: [MoFeSC] with a central carbide (Spatzal et al., 2011). The resting state has total spin . Seven iron atoms, each with several unpaired d electrons, can couple their spins in many ways and the metal-based electrons can be localised or shared (mixed valence).
Built from
earlier problems → this oneThe problems this one is built from: progress or tools it needs (builds on), special cases that come first (generalizes), and weaker results on the way (implies). On the right, what builds on it.
- Start with
- Neural-network wavefunctions at chemical accuracy for 100+ electron molecules with transferable, amortised trainingComputational Chemistry · D54
- Step 2
- Step 3
- A transferable exchange–correlation functional free of delocalization and self-interaction errorComputational Chemistry · D72
- Step 4
- Chemical accuracy for open-shell transition-metal complexes at polynomial cost without a hand-chosen active spaceComputational Chemistry · D66
- Step 5
- The electronic ground state and low-lying spectrum of the nitrogenase FeMo-cofactor in its protein environmentThis problem
- Then
Path to understanding
foundations → problemThe research entries this problem rests on, in the order to read them. Each links to its explainer.
- Start with
- Step 2
- Step 3
- Strong correlation: multireference methods, DMRG and selected CIAlgorithm · host
- Then
- The electronic ground state and low-lying spectrum of the nitrogenase FeMo-cofactor in its protein environmentThe problem
State of the art
- Model Hamiltonian. Reiher et al. (2017) used a CAS of about 54 electrons in 54 orbitals as the target for fault-tolerant quantum phase estimation. Li et al. (arXiv:1809.10307, J. Chem. Phys. 2019) argued that the FeMoco ground-state problem is characterised by many spin-state candidates close in energy.
- Classical estimate to chemical accuracy (preprint). Zhai, Li, Zhang, Li, Lee and Chan (arXiv:2601.04621, January 2026, preprint) report a ground-state energy for a FeMoco model to chemical accuracy using high-order coupled cluster (UCCSDTQ) plus extrapolated DMRG, identify several spin-isomer candidates degenerate to chemical accuracy, and examine the impact of extra excitations and geometry on the low-lying landscape. They report a wall-clock cost for their largest DMRG sweeps that is of the same order as published fault-tolerant quantum estimates for the same model at 1 kcal/mol (both figures are the authors' own accounting, on their own hardware and under assumptions such as order-one initial-state overlap; neither has been independently reproduced, so the comparison should be read as indicative rather than settled). This weakens the case that the standard model Hamiltonian needs a quantum computer; the work has not yet been through peer review as far as this entry knows.
- Alternative classical studies. A March 2026 conference abstract using selected CI reports that FeMoco and Fe–S clusters lie near the edge of classical feasibility while P450 and Ru clusters are tractable, and that baselines differ because problem definitions differ (APS March Meeting 2026; abstract only). Legeza et al. (arXiv:2603.28648, preprint) report a high-accuracy classical ground-state energy for an FeS CAS(54,36) model space and CAS-SCF orbital optimisation for active spaces up to 89 electrons in 102 orbitals.
Realistic applications
Understanding how nitrogenase breaks the N≡N bond at ambient conditions informs catalysts for ammonia synthesis (a process consuming around 1–2% of world energy via Haber–Bosch) and clarifies the electronic structure of metal–sulfur clusters generally. As a benchmark, the model problem defines whether a quantum computer offers an edge for this class of molecule.
What counts as solved
Model problem: an energy of the agreed active-space Hamiltonian (published coefficients) with a rigorous bound or independent agreement of two methods within 1 kcal/mol. Real system: a first-principles ground-state and low-lying-state assignment of the E and E states that reproduces measured spectroscopic parameters (Mössbauer isomer shifts, hyperfine and zero-field splittings) within experimental error, with the environment included.
How it gets verified
Bound / recordA numeric bound or record checked from a certificate or recomputation.
The model problem is the energy of the agreed FeMoco active-space Hamiltonian (published coefficients), settled by a rigorous bound or independent agreement of two methods within 1 kcal/mol. The real-system part (ground state and low-lying E0 and E4 assignment reproducing measured spectroscopic parameters) is judged against experiment by experts, so only the model problem is machine-checkable.
Claims under verification
+ add a claimNo claimed results on the Verification board for this problem yet.
Where the work is
Heavy classical computation (DMRG, coupled cluster, QM/MM) steered by spectroscopy; active-space and environment modelling need new method choices.
Bottlenecks
ranked by votes- #1EmpiricalSpectroscopic constraints for the real cluster
EPR, ENDOR, Mössbauer and XES data do not uniquely fix the electronic structure, and geometry and protonation states are uncertain.
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Connected problems
Progress
- Jan 8, 2026Classical chemical-accuracy estimate (preprint)source
Zhai et al. report a classical energy estimate for the model Hamiltonian and several near-degenerate spin isomers.
- Nov 1, 2021THC reduces quantum costsource
Lee et al. reduce estimated gate counts for FeMoco by orders of magnitude (date approximate).
- May 11, 2016FeMoco as a quantum benchmarksource
Reiher et al. estimate quantum resources for the FeMoco active-space problem (arXiv date).
- Nov 18, 2011Interstitial carbide identifiedsource
Spatzal et al. establish the central light atom of FeMoco as carbon.